IL_6EM1_018
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6EM1|1|1|A|519, 6EM1|1|1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_018 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1433
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6EM1|1|1|G|517
6EM1|1|1|G|518
6EM1|1|1|A|519
6EM1|1|1|U|520
6EM1|1|1|A|521
6EM1|1|1|A|522
6EM1|1|1|A|523
6EM1|1|1|U|524
6EM1|1|1|C|525
*
6EM1|1|1|G|567
6EM1|1|1|G|568
6EM1|1|1|A|569
6EM1|1|1|A|570
6EM1|1|1|U|571
6EM1|1|1|A|572
6EM1|1|1|C|573
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L14-A
- Chain S
- 60S ribosomal protein L20-A
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