IL_6EM1_031

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UU*AGA

Length

5 nucleotides

Bulged bases

6EM1|1|1|G|1097

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_031 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3846

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

6EM1|1|1|U|986
6EM1|1|1|U|987
*
6EM1|1|1|A|1062
6EM1|1|1|G|1097
6EM1|1|1|A|1098

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L7-A