IL_6EM1_040
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6EM1|1|1|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_040 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.4567
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6EM1|1|1|G|1234
6EM1|1|1|U|1235
6EM1|1|1|G|1236
6EM1|1|1|G|1237
6EM1|1|1|C|1238
*
6EM1|1|1|G|1250
6EM1|1|1|A|1251
6EM1|1|1|A|1252
6EM1|1|1|U|1253
6EM1|1|1|C|1254
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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