IL_6EM1_048
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCUCU*AACGUGAGC
- Length
- 14 nucleotides
- Bulged bases
- 6EM1|1|1|A|2941, 6EM1|1|1|C|2942, 6EM1|1|1|G|2945, 6EM1|1|1|A|2946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EM1|1|1|G|2878
6EM1|1|1|C|2879
6EM1|1|1|U|2880
6EM1|1|1|C|2881
6EM1|1|1|U|2882
*
6EM1|1|1|A|2940
6EM1|1|1|A|2941
6EM1|1|1|C|2942
6EM1|1|1|G|2943
6EM1|1|1|U|2944
6EM1|1|1|G|2945
6EM1|1|1|A|2946
6EM1|1|1|G|2947
6EM1|1|1|C|2948
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
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