IL_6EM1_060

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6EM1|1|1|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_060 not in the Motif Atlas

Geometric match to IL_5TBW_125

Geometric discrepancy: 0.2563

The information below is about IL_5TBW_125

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6EM1|1|1|C|3193
6EM1|1|1|C|3194
*
6EM1|1|1|G|3197
6EM1|1|1|U|3198
6EM1|1|1|G|3199

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain M

60S ribosomal protein L14-A

Chain O

60S ribosomal protein L16-A