IL_6EM1_061

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

6EM1|1|1|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_061 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.1113

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6EM1|1|1|C|3225
6EM1|1|1|A|3226
6EM1|1|1|A|3227
6EM1|1|1|C|3228
6EM1|1|1|G|3229
*
6EM1|1|1|U|3258
6EM1|1|1|U|3259
6EM1|1|1|G|3260

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6-A

Chain M

60S ribosomal protein L14-A

Chain f

60S ribosomal protein L33-A