IL_6EM1_069

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

6EM1|1|1|U|3341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EM1_069 not in the Motif Atlas

Geometric match to IL_4KZD_001

Geometric discrepancy: 0.3337

The information below is about IL_4KZD_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6EM1|1|1|G|3340
6EM1|1|1|U|3341
6EM1|1|1|A|3342
*
6EM1|1|1|U|3363
6EM1|1|1|C|3364

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24