IL_6EM1_069
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUA*UC
- Length
- 5 nucleotides
- Bulged bases
- 6EM1|1|1|U|3341
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_069 not in the Motif Atlas
- Geometric match to IL_4KZD_001
- Geometric discrepancy: 0.3337
- The information below is about IL_4KZD_001
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
6EM1|1|1|G|3340
6EM1|1|1|U|3341
6EM1|1|1|A|3342
*
6EM1|1|1|U|3363
6EM1|1|1|C|3364
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain u
- Ribosome biogenesis protein RLP24
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