IL_6EM1_081
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_081 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.1437
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6EM1|1|1|C|2889
6EM1|1|1|A|2890
6EM1|1|1|U|2891
6EM1|1|1|A|2892
*
6EM1|1|1|U|2909
6EM1|1|1|A|2910
6EM1|1|1|A|2911
6EM1|1|1|G|2912
6EM1|1|1|C|2913
6EM1|1|1|G|2914
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain V
- 60S ribosomal protein L23-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
- Chain z
- UPF0642 protein YBL028C
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