IL_6EM1_084
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UU*AGUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_084 not in the Motif Atlas
- Geometric match to IL_9E6Q_011
- Geometric discrepancy: 0.3335
- The information below is about IL_9E6Q_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_94991.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 18
Unit IDs
6EM1|1|1|U|177
6EM1|1|1|U|178
*
6EM1|1|1|A|238
6EM1|1|1|G|239
6EM1|1|1|U|240
6EM1|1|1|G|241
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L13-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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