IL_6ENJ_042

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6ENJ|1|A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_042 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3899

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ENJ|1|A|G|1087
6ENJ|1|A|A|1088
6ENJ|1|A|A|1089
6ENJ|1|A|A|1090
6ENJ|1|A|G|1091
*
6ENJ|1|A|C|1100
6ENJ|1|A|U|1101
6ENJ|1|A|C|1102

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36