IL_6ENJ_065

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6ENJ|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_065 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.1141

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6ENJ|1|A|C|1686
6ENJ|1|A|G|1687
6ENJ|1|A|U|1688
6ENJ|1|A|A|1689
6ENJ|1|A|A|1690
6ENJ|1|A|C|1691
*
6ENJ|1|A|G|1696
6ENJ|1|A|G|1697
6ENJ|1|A|A|1698
6ENJ|1|A|G|1699
6ENJ|1|A|A|1700
6ENJ|1|A|A|1701
6ENJ|1|A|G|1702

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA