IL_6ENJ_129

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.4765

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6ENJ|1|a|U|409
6ENJ|1|a|G|410
6ENJ|1|a|A|411
6ENJ|1|a|A|412
6ENJ|1|a|G|413
6ENJ|1|a|A|414
6ENJ|1|a|A|415
6ENJ|1|a|G|416
*
6ENJ|1|a|U|427
6ENJ|1|a|G|428
6ENJ|1|a|U|429
6ENJ|1|a|A|430
6ENJ|1|a|A|431
6ENJ|1|a|A|432
6ENJ|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4