IL_6ENJ_138

3D structure

PDB id

6ENJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ENJ_138 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.2427

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6ENJ|1|a|C|613
6ENJ|1|a|C|614
*
6ENJ|1|a|G|626
6ENJ|1|a|G|627
6ENJ|1|a|G|628

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16