IL_6FAI_014

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

6FAI|1|2|U|260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_014 not in the Motif Atlas

Homologous match to IL_4V88_397

Geometric discrepancy: 0.1392

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6FAI|1|2|G|204
6FAI|1|2|U|205
6FAI|1|2|A|206
*
6FAI|1|2|U|259
6FAI|1|2|U|260
6FAI|1|2|U|261
6FAI|1|2|U|262
6FAI|1|2|C|263

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A