IL_6FAI_020

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6FAI|1|2|U|320, 6FAI|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_020 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2141

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6FAI|1|2|U|318
6FAI|1|2|U|319
6FAI|1|2|U|320
6FAI|1|2|C|321
6FAI|1|2|G|322
6FAI|1|2|A|323
*
6FAI|1|2|U|345
6FAI|1|2|G|346

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A