IL_6FAI_030

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CGCGGUAAUUCCAGCU

Length

18 nucleotides

Bulged bases

6FAI|1|2|U|578, 6FAI|1|2|A|579

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FAI|1|2|A|550
6FAI|1|2|G|551
*
6FAI|1|2|C|573
6FAI|1|2|G|574
6FAI|1|2|C|575
6FAI|1|2|G|576
6FAI|1|2|G|577
6FAI|1|2|U|578
6FAI|1|2|A|579
6FAI|1|2|A|580
6FAI|1|2|U|581
6FAI|1|2|U|582
6FAI|1|2|C|583
6FAI|1|2|C|584
6FAI|1|2|A|585
6FAI|1|2|G|586
6FAI|1|2|C|587
6FAI|1|2|U|588

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain e

40S ribosomal protein S30-A

Chain k

Ribosome biogenesis protein TSR1

Chain l

Serine/threonine-protein kinase RIO2