IL_6FAI_048

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6FAI|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_048 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2884

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6FAI|1|2|U|893
6FAI|1|2|U|894
6FAI|1|2|G|895
6FAI|1|2|U|896
6FAI|1|2|C|897
6FAI|1|2|A|898
6FAI|1|2|G|899
*
6FAI|1|2|C|910
6FAI|1|2|U|911
6FAI|1|2|U|912
6FAI|1|2|G|913
6FAI|1|2|G|914
6FAI|1|2|A|915
6FAI|1|2|U|916
6FAI|1|2|U|917
6FAI|1|2|U|918
6FAI|1|2|A|919

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S1-A

Chain O

40S ribosomal protein S14-A