IL_6FAI_055

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAA*UUU

Length

7 nucleotides

Bulged bases

6FAI|1|2|G|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_055 not in the Motif Atlas

Geometric match to IL_4V88_470

Geometric discrepancy: 0.2059

The information below is about IL_4V88_470

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FAI|1|2|G|1149
6FAI|1|2|G|1150
6FAI|1|2|A|1151
6FAI|1|2|A|1152
*
6FAI|1|2|U|1626
6FAI|1|2|U|1627
6FAI|1|2|U|1628

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain h

Pre-rRNA-processing protein PNO1

Chain l

Serine/threonine-protein kinase RIO2