IL_6FAI_065

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CUG

Length

5 nucleotides

Bulged bases

6FAI|1|2|U|1432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_065 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.318

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6FAI|1|2|U|1276
6FAI|1|2|G|1277
*
6FAI|1|2|C|1431
6FAI|1|2|U|1432
6FAI|1|2|G|1433

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain d

40S ribosomal protein S29-A

Chain i

Essential nuclear protein 1