IL_6FAI_071

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

6FAI|1|2|U|1370, 6FAI|1|2|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_071 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.1969

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FAI|1|2|G|1352
6FAI|1|2|U|1353
6FAI|1|2|G|1354
*
6FAI|1|2|U|1369
6FAI|1|2|U|1370
6FAI|1|2|A|1371
6FAI|1|2|U|1372
6FAI|1|2|C|1373

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16-A

Chain T

40S ribosomal protein S19-A

Chain U

40S ribosomal protein S20