IL_6FKR_074
3D structure
- PDB id
- 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6FKR|1|1A|A|1938, 6FKR|1|1A|C|1941, 6FKR|1|1A|U|1944, 6FKR|1|1A|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FKR_074 not in the Motif Atlas
- Homologous match to IL_7RQB_077
- Geometric discrepancy: 0.0775
- The information below is about IL_7RQB_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FKR|1|1A|C|1934
6FKR|1|1A|G|1935
6FKR|1|1A|A|1936
6FKR|1|1A|A|1937
6FKR|1|1A|A|1938
6FKR|1|1A|5MU|1939
6FKR|1|1A|U|1940
6FKR|1|1A|C|1941
6FKR|1|1A|5MC|1942
6FKR|1|1A|U|1943
6FKR|1|1A|U|1944
6FKR|1|1A|G|1945
*
6FKR|1|1A|C|1961
6FKR|1|1A|5MC|1962
6FKR|1|1A|U|1963
6FKR|1|1A|G|1964
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
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