IL_6FKR_113

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGA*UA

Length

5 nucleotides

Bulged bases

6FKR|1|1a|G|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_113 not in the Motif Atlas

Homologous match to IL_4LFB_001

Geometric discrepancy: 0.0748

The information below is about IL_4LFB_001

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6FKR|1|1a|U|30
6FKR|1|1a|G|31
6FKR|1|1a|A|32
*
6FKR|1|1a|U|552
6FKR|1|1a|A|553

Current chains

Chain 1a

16 ribosomal RNA

Nearby chains

Chain 1l

30S ribosomal protein S12