IL_6FKR_212

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6FKR|1|2A|U|1142, 6FKR|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_212 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.0743

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6FKR|1|2A|C|1018
6FKR|1|2A|U|1019
6FKR|1|2A|A|1020
6FKR|1|2A|A|1021
6FKR|1|2A|G|1022
6FKR|1|2A|U|1023
6FKR|1|2A|G|1024
*
6FKR|1|2A|C|1140
6FKR|1|2A|U|1141
6FKR|1|2A|U|1142
6FKR|1|2A|A|1142|||A
6FKR|1|2A|A|1143
6FKR|1|2A|G|1144

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13