IL_6FKR_215

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6FKR|1|2A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_215 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.1666

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6FKR|1|2A|C|1043
6FKR|1|2A|G|1044
6FKR|1|2A|A|1045
6FKR|1|2A|A|1046
6FKR|1|2A|G|1047
6FKR|1|2A|A|1048
6FKR|1|2A|C|1049
6FKR|1|2A|A|1050
6FKR|1|2A|G|1051
*
6FKR|1|2A|U|1108
6FKR|1|2A|C|1109
6FKR|1|2A|G|1110
6FKR|1|2A|A|1111
6FKR|1|2A|G|1112

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2H

50S ribosomal protein L6