IL_6FKR_256

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_256 not in the Motif Atlas

Geometric match to IL_5TBW_016

Geometric discrepancy: 0.3679

The information below is about IL_5TBW_016

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FKR|1|2A|C|2108
6FKR|1|2A|U|2109
6FKR|1|2A|G|2110
*
6FKR|1|2A|C|2179
6FKR|1|2A|U|2180
6FKR|1|2A|G|2181

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains