IL_6FKR_343

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

G(4OC)C(5MC)G*CG(UR3)AAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_343 not in the Motif Atlas

Homologous match to IL_4LFB_057

Geometric discrepancy: 0.0969

The information below is about IL_4LFB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FKR|1|2a|G|1401
6FKR|1|2a|4OC|1402
6FKR|1|2a|C|1403
6FKR|1|2a|5MC|1404
6FKR|1|2a|G|1405
*
6FKR|1|2a|C|1496
6FKR|1|2a|G|1497
6FKR|1|2a|UR3|1498
6FKR|1|2a|A|1499
6FKR|1|2a|A|1500
6FKR|1|2a|C|1501

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2z

Ribosome-associated inhibitor A