IL_6FKR_344

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GU(5MC)AC*GAAGUC

Length

11 nucleotides

Bulged bases

6FKR|1|2a|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_344 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.1746

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6FKR|1|2a|G|1405
6FKR|1|2a|U|1406
6FKR|1|2a|5MC|1407
6FKR|1|2a|A|1408
6FKR|1|2a|C|1409
*
6FKR|1|2a|G|1491
6FKR|1|2a|A|1492
6FKR|1|2a|A|1493
6FKR|1|2a|G|1494
6FKR|1|2a|U|1495
6FKR|1|2a|C|1496

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2l

30S ribosomal protein S12

Chain 2z

Ribosome-associated inhibitor A