IL_6FKR_346

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_346 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.065

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6FKR|1|2a|G|1416
6FKR|1|2a|G|1417
6FKR|1|2a|A|1418
6FKR|1|2a|G|1419
*
6FKR|1|2a|U|1481
6FKR|1|2a|G|1482
6FKR|1|2a|A|1483
6FKR|1|2a|C|1484

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA