Loop IL_6FKR

3D structure

PDB id: 6FKR (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.2 Å

Loop

Sequence: CCAGGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAGAGUG*CUCACUGG
Length: 48 nucleotides
Bulged bases: 6FKR|1|1A|C|1076, 6FKR|1|1A|A|1088
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6FKR|1|1A|C|1052
6FKR|1|1A|C|1053
6FKR|1|1A|A|1054
6FKR|1|1A|G|1055
6FKR|1|1A|G|1056
6FKR|1|1A|A|1057
6FKR|1|1A|G|1058
6FKR|1|1A|G|1059
6FKR|1|1A|U|1060
6FKR|1|1A|U|1061
6FKR|1|1A|G|1062
6FKR|1|1A|G|1063
6FKR|1|1A|C|1064
6FKR|1|1A|U|1065
6FKR|1|1A|U|1066
6FKR|1|1A|A|1067
6FKR|1|1A|G|1068
6FKR|1|1A|A|1069
6FKR|1|1A|A|1070
6FKR|1|1A|G|1071
6FKR|1|1A|C|1072
6FKR|1|1A|A|1073
6FKR|1|1A|G|1074
6FKR|1|1A|C|1075
6FKR|1|1A|C|1076
6FKR|1|1A|A|1077
6FKR|1|1A|U|1078
6FKR|1|1A|C|1079
6FKR|1|1A|C|1080
6FKR|1|1A|U|1081
6FKR|1|1A|U|1082
6FKR|1|1A|U|1083
6FKR|1|1A|A|1084
6FKR|1|1A|A|1085
6FKR|1|1A|A|1086
6FKR|1|1A|G|1087
6FKR|1|1A|A|1088
6FKR|1|1A|G|1089
6FKR|1|1A|U|1090
6FKR|1|1A|G|1091
*
6FKR|1|1A|C|1100
6FKR|1|1A|U|1101
6FKR|1|1A|C|1102
6FKR|1|1A|A|1103
6FKR|1|1A|C|1104
6FKR|1|1A|U|1105
6FKR|1|1A|G|1106
6FKR|1|1A|G|1107

Current chains

Chain 1A: 23S ribosomal RNA

Nearby chains

Chain 19: 50S ribosomal protein L36
Chain 1Q: 50S ribosomal protein L16
Chain 1Z: 50S ribosomal protein L25

IL_6FKR_351