IL_6FKR_362

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGG*CCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_362 not in the Motif Atlas

Geometric match to IL_5TBW_056

Geometric discrepancy: 0.3262

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6FKR|1|2a|C|656
6FKR|1|2a|G|657
6FKR|1|2a|G|658
*
6FKR|1|2a|C|747
6FKR|1|2a|C|748
6FKR|1|2a|C|749
6FKR|1|2a|G|750

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2h

30S ribosomal protein S8

Chain 2o

30S ribosomal protein S15