IL_6FT6_028
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6FT6|1|1|A|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FT6_028 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.4114
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FT6|1|1|G|805
6FT6|1|1|A|806
6FT6|1|1|A|807
6FT6|1|1|A|808
6FT6|1|1|G|809
*
6FT6|1|1|C|931
6FT6|1|1|U|932
6FT6|1|1|A|933
6FT6|1|1|G|934
6FT6|1|1|U|935
6FT6|1|1|A|936
6FT6|1|1|G|937
6FT6|1|1|C|938
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain j
- 60S ribosomal protein L37-A
- Chain m
- Nucleolar GTP-binding protein 2
Coloring options: