IL_6FT6_037

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_037 not in the Motif Atlas

Homologous match to IL_5TBW_044

Geometric discrepancy: 0.3581

The information below is about IL_5TBW_044

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FT6|1|1|C|1069
6FT6|1|1|U|1070
6FT6|1|1|U|1071
*
6FT6|1|1|G|1087
6FT6|1|1|U|1088
6FT6|1|1|G|1089

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A