IL_6FT6_073

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6FT6|1|1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_073 not in the Motif Atlas

Homologous match to IL_5TBW_086

Geometric discrepancy: 0.4503

The information below is about IL_5TBW_086

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6FT6|1|1|C|2204
6FT6|1|1|U|2205
6FT6|1|1|G|2206
*
6FT6|1|1|C|2237
6FT6|1|1|G|2238

Current chains

Chain 1

25S ribosomal RNA

Nearby chains