IL_6FT6_077

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6FT6|1|1|A|2397, 6FT6|1|1|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_077 not in the Motif Atlas

Geometric match to IL_4WF9_078

Geometric discrepancy: 0.3341

The information below is about IL_4WF9_078

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6FT6|1|1|G|2396
6FT6|1|1|A|2397
6FT6|1|1|A|2398
*
6FT6|1|1|U|2981
6FT6|1|1|A|2982
6FT6|1|1|C|2983
6FT6|1|1|C|2984

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17-A