IL_6FT6_079
3D structure
- PDB id
- 6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GA*UACC
- Length
- 6 nucleotides
- Bulged bases
- 6FT6|1|1|A|2808
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FT6_079 not in the Motif Atlas
- Homologous match to IL_5TBW_094
- Geometric discrepancy: 0.2017
- The information below is about IL_5TBW_094
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
6FT6|1|1|G|2412
6FT6|1|1|A|2413
*
6FT6|1|1|U|2807
6FT6|1|1|A|2808
6FT6|1|1|C|2809
6FT6|1|1|C|2810
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain r
- Ribosome biogenesis protein NSA2
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