IL_6FT6_135

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6FT6|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_135 not in the Motif Atlas

Homologous match to IL_8CRE_010

Geometric discrepancy: 0.572

The information below is about IL_8CRE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70376.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6FT6|1|1|U|169
6FT6|1|1|G|170
*
6FT6|1|1|U|248
6FT6|1|1|U|249
6FT6|1|1|U|250
6FT6|1|1|G|251
6FT6|1|1|U|252
6FT6|1|1|A|253

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A