IL_6FTI_003

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6FTI|1|u|U|13

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_003 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1431

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6FTI|1|u|A|12
6FTI|1|u|U|13
6FTI|1|u|C|14
*
6FTI|1|w|G|143
6FTI|1|w|U|144

Current chains

Chain u

28S rRNA

Chain w

5.8S ribosomal RNA

Nearby chains

Chain G

eL8

Chain N

Ribosomal protein L15

Chain X

uL23