IL_6FTI_004
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_004 not in the Motif Atlas
- Geometric match to IL_6IA2_005
- Geometric discrepancy: 0.1293
- The information below is about IL_6IA2_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 214
Unit IDs
6FTI|1|u|G|16
6FTI|1|u|A|17
6FTI|1|u|C|18
*
6FTI|1|w|G|139
6FTI|1|w|C|140
6FTI|1|w|C|141
Current chains
- Chain u
- 28S rRNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain X
- uL23
- Chain h
- uL29
Coloring options: