IL_6FTI_008

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6FTI|1|u|G|119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_008 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2165

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6FTI|1|u|C|118
6FTI|1|u|G|119
6FTI|1|u|A|120
6FTI|1|u|A|121
*
6FTI|1|u|U|152
6FTI|1|u|G|153

Current chains

Chain u

28S rRNA

Nearby chains

Chain G

eL8

Chain N

Ribosomal protein L15

Chain h

uL29