IL_6FTI_052

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6FTI|1|u|A|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_052 not in the Motif Atlas

Homologous match to IL_5TBW_024

Geometric discrepancy: 0.0953

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6FTI|1|u|C|1467
6FTI|1|u|C|1468
*
6FTI|1|u|G|1496
6FTI|1|u|A|1497
6FTI|1|u|G|1498

Current chains

Chain u

28S rRNA

Nearby chains

Chain Q

uL14

Chain a

uL15

Chain b

60S ribosomal protein L29