IL_6FTI_069

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

6FTI|1|u|U|1754, 6FTI|1|u|C|1755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_069 not in the Motif Atlas

Geometric match to IL_7A0S_044

Geometric discrepancy: 0.2947

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6FTI|1|u|G|1753
6FTI|1|u|U|1754
6FTI|1|u|C|1755
6FTI|1|u|U|1756
*
6FTI|1|u|A|1775
6FTI|1|u|A|1776
6FTI|1|u|C|1777

Current chains

Chain u

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L5