IL_6FTI_087
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 6FTI|1|u|U|2305
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_087 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.1299
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
6FTI|1|u|C|2302
6FTI|1|u|C|2303
6FTI|1|u|U|2304
6FTI|1|u|U|2305
6FTI|1|u|G|2306
6FTI|1|u|A|2307
6FTI|1|u|A|2308
6FTI|1|u|G|2309
*
6FTI|1|u|U|2329
6FTI|1|u|G|2330
6FTI|1|u|G|2331
6FTI|1|u|A|2332
6FTI|1|u|G|2333
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain Y
- Ribosomal protein L26
- Chain e
- eL32
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: