IL_6FTI_098

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6FTI|1|u|U|2687

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_098 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1909

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6FTI|1|u|C|2646
6FTI|1|u|A|2647
6FTI|1|u|G|2648
*
6FTI|1|u|C|2685
6FTI|1|u|G|2686
6FTI|1|u|U|2687
6FTI|1|u|G|2688

Current chains

Chain u

28S rRNA

Nearby chains

Chain g

eL34