IL_6FTI_132

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_132 not in the Motif Atlas

Homologous match to IL_5TBW_102

Geometric discrepancy: 0.1345

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6FTI|1|u|G|4400
6FTI|1|u|G|4401
*
6FTI|1|u|U|4442
6FTI|1|u|C|4443
6FTI|1|u|C|4444

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain I

Ribosomal protein L10 (Predicted)

Chain b

60S ribosomal protein L29