IL_6FTI_133

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCU*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_133 not in the Motif Atlas

Geometric match to IL_5TBW_103

Geometric discrepancy: 0.1029

The information below is about IL_5TBW_103

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6FTI|1|u|G|4401
6FTI|1|u|C|4402
6FTI|1|u|U|4403
*
6FTI|1|u|G|4440
6FTI|1|u|A|4441
6FTI|1|u|U|4442

Current chains

Chain u

28S rRNA

Nearby chains

Chain I

Ribosomal protein L10 (Predicted)

Chain b

60S ribosomal protein L29