IL_6FTI_139

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6FTI|1|u|A|4518, 6FTI|1|u|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_139 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0528

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6FTI|1|u|C|4458
6FTI|1|u|U|4459
*
6FTI|1|u|A|4517
6FTI|1|u|A|4518
6FTI|1|u|C|4519
6FTI|1|u|G|4520

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

uL14