IL_6FTI_179

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

6FTI|1|u|C|503

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_179 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2566

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6FTI|1|u|G|500
6FTI|1|u|C|501
6FTI|1|u|C|502
6FTI|1|u|C|503
6FTI|1|u|G|504
6FTI|1|u|G|505
*
6FTI|1|u|U|653
6FTI|1|u|C|654

Current chains

Chain u

28S rRNA

Nearby chains

Chain C

Ribosomal protein L4

Chain Q

uL14