IL_6FTJ_004
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CC*GAG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_004 not in the Motif Atlas
- Homologous match to IL_5TBW_004
- Geometric discrepancy: 0.1605
- The information below is about IL_5TBW_004
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_05035.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 38
Unit IDs
6FTJ|1|u|C|26
6FTJ|1|u|C|27
*
6FTJ|1|u|G|55
6FTJ|1|u|A|56
6FTJ|1|u|G|57
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain j
- Ribosomal protein L37
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: