IL_6FTJ_007

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6FTJ|1|u|G|119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTJ_007 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.2165

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6FTJ|1|u|C|118
6FTJ|1|u|G|119
6FTJ|1|u|A|120
6FTJ|1|u|A|121
*
6FTJ|1|u|U|152
6FTJ|1|u|G|153

Current chains

Chain u

28S rRNA

Nearby chains

Chain G

uL8

Chain N

Ribosomal protein L15

Chain h

uL29