IL_6FTJ_008
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AU*ACAUGU
- Length
- 8 nucleotides
- Bulged bases
- 6FTJ|1|u|U|150
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTJ_008 not in the Motif Atlas
- Homologous match to IL_5TBW_007
- Geometric discrepancy: 0.1529
- The information below is about IL_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6FTJ|1|u|A|121
6FTJ|1|u|U|122
*
6FTJ|1|u|A|147
6FTJ|1|u|C|148
6FTJ|1|u|A|149
6FTJ|1|u|U|150
6FTJ|1|u|G|151
6FTJ|1|u|U|152
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain G
- uL8
- Chain N
- Ribosomal protein L15
- Chain h
- uL29
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: